Link to CHTC Home Page

Logins have changed for users with accounts on submit1 and submit2: please see the login guide for details on your new login information.

Automate CHTC Log In

This guide describes

  • how to authenticate with Duo when logging into CHTC’s HTC and HPC systems
  • how to set your login (SSH) configuration to “reuse” a two-factor authenticated connection over a certain period of time.
  • terminals and applications that are known to support persistent connections

Authentication with Duo

As of December 2022, accessing CHTC resources now requires two-factor authentication. The first “factor” uses your NetID password (or SSH keys) and the second “factor” is authentication using Duo, via either a Duo fob or the Duo app.

See the following video for an demonstration of two-factor authentication with Duo when logging into CHTC:

Re-Using SSH Connections

To reduce the number of times it is necessary to enter your credentials, it’s possible to customize your SSH configuration in a way that allows you to “reuse” a connection for logging in again or moving files. This configuration is optional, and most useful if you will connect to the same server multiple times in a short window, for example, when uploading or downloading files.

WARNING: This guide describes how to configure your local machine to not require reentering your NetID password or Duo authentication each time you login. This should ONLY be used on secure devices that you manage - it should not be used on any shared laptop, desktop, or research group resource. Users found violating this policy risk having their CHTC account permanently deactivated.

The instructions below are meant for users who can use a terminal (Mac, Linux, newer Windows operating systems):

  1. Open a terminal window.

  2. Create (or edit) your personal SSH configuration file at ~/.ssh/config to use what’s called “ControlMaster” This is the text that should be added to a file called config in the .ssh directory in your computer’s home directory:
     Host *
       # Turn ControlMaster on
       ControlMaster auto
       # ControlMaster connection will persist
       # for 2 hours of idleness, after which
       # it will disconnect
       ControlPersist 2h
       # Where to store files that represent
       # the ControlMaster persistent connections
       ControlPath ~/.ssh/connections/%r@%h:%p

    If you’re not able to find or create the config file, executing the code below from a terminal on your computer will add the right information to the config file

     # Let's create (or add to) our SSH client configuration file. 
     echo "
     Host *
       # Turn ControlMaster on
       ControlMaster auto
       # ControlMaster connection will persist
       # for 2 hours of idleness, after which
       # it will disconnect
       ControlPersist 2h
       # Where to store files that represent
       # the ControlMaster persistent connections
       ControlPath ~/.ssh/connections/%r@%h:%p" >> ~/.ssh/config
  3. You also create a directory that will be used to track connections. In the same .ssh directory, make a folder called connections by typing:
     $ mkdir -p ~/.ssh/connections

    Once you login to a CHTC server, this is where the system will store information about your previous connection information so that you do not have to reenter your password or Duo authenticate.

  4. Now, log into your CHTC submit server or login node as normal. The first time you log in, you will need to use two-factor authentication, but subsequent logins to that machine will not require authentication as long as they occur within the time value used in the ControlPersist configuration option (so in this example, 2 hours).

For Windows users who use PuTTY to log in, you need to go to the Connection -> SSH section in the “Category” menu on the left side, and then check the “Share SSH Connection if possible” box. If you don’t see this option, try downloading a newer version of PuTTY.

Ending “Stuck” Connections

Sometimes a connection goes stale and you can’t reconnect using it, even if it is within the timeout window. In this case, you can avoid using the existing connection by removing the relevant file in ~/.ssh/connections; This will probably look something like:

$ ls ~/.ssh/connections/
$ rm ~/.ssh/connections/

Connection settings

Note that all port forwarding, including X display forwarding, must be setup by the initial connection and cannot be changed. If you forget to use -Y on the initial connection, you will not be able to open X programs on subsequent connections.

File Transfer Tools

There are a variety of tools that people use for transferring and editing files like WinSCP and MobaXTerm. Some of these tools are able to use ssh configuration or have options that do not require Duo 2FA every time a file is uploaded or downloaded or edited, but some do not.

Known to support persistent connections

  • Linux, Mac, and Windows Subsystem for Linux (WSL) terminals

  • WinSCP

    May need to adjust preferences. Within WinSCP:

    1. Go to Options, then Preferences, and click on Background under the Transfer section.
    2. Set ‘Maximal number of transfers at the same time:’ to 1.
    3. Make sure ‘Use multiple connections for single transfer’ checkbox is checked.
    4. Click ‘OK’ to save.
  • Cyberduck (taken from these docs

    Cyberduck does not use SSH configurations, therefore the following setting can be used to enable connection persistence. Within Cyberduck:

    1. Select Preferences, then the Transfers button, and then the General section.
    2. Under “Transfers”, use the “Transfer Files” drop-down to select “Use browser connection”.

Known to NOT support ControlMaster or similar persistent connections

  • Windows PowerShell

  • File transfer tools from Panic, like Transmit and Nova

Other Tools

For those on spotty wireless or those who move a lot with their connection (and on *nix) then the open source shell Mosh ( has capabilities to keep sessions open as you change connections. Note that Mosh doesn’t support the following SSH features:

  • ControlMaster (connection multiplexing)
  • X11 forwarding
  • Port forwarding