HPC Computing Guides

Get started

HPC system transition to a new Linux Version (CentOS Stream 9) CHTC /staging and /projects next steps System overview Log in to CHTC Automate CHTC login Basic shell commands

Submit jobs

Submitting and managing jobs using SLURM Reviewing job information using SLURM

Manage data

Transfer files to/from CHTC

Local computer ResearchDrive Private GitHub repo

Software

Overview and Policies Spack

Set up Install software Create custom modules Recreate Spack installs on a new operating system

Containers

Use Apptainer containers Build an Apptainer container

Troubleshooting

Known issues on the HPC

External resources

Slurm manual Software Carpentry UW-Madison software training for students

Guide Sections

Get started Submit jobs Manage data Software Troubleshooting External resources