The HTC System is Transitioning to a Newer Linux Version (CentOS 7)
CHTC staff are in the midst up upgrading the default operating
system on our high throughput compute system from
Scientific Linux 6 (SL6) to a newer and slightly different
Linux version - CentOS 7. We will update this page with more
information as we pass major transition milestones.
1. Current Status
We have started converting our computers to the new operating
system, in a gradual process over the course of the next several months.
As of November 7, 2017, about 50% of our HTC system is running CentOS 7.
2. Using Both Operating Systems
As of October 17, CHTC-managed submit servers default to allow jobs to run on both
operating systems, unless a user indicates otherwise in the submit file, which will
override the default (see below).
Most jobs in our high throughput
system were compiled and run on our old operating system (Scientific Linux 6) and
should be able to run effectively on both operating systems without any issues.
If you experience any issues with your jobs that you cannot diagnose,
please let CHTC facilitators know
immediately by emailing email@example.com.
3. Requesting a Specific Operating System
If your job requires our newer operating system, you can override the
default requirement that permits jobs to run on both operating systems.
Note that most jobs can run on both SL6 and CentOS 7 and
requesting a single operating system will restrict your jobs from accessing
the full capacity of CHTC that they could use.
Running on just CentOS 7 should only be necessary for code compiled on
CentOS 7 (including newer versions of R) or Docker jobs. If this applies to you and
you truly need to run on one operating system, read on.
To request that your jobs run on CentOS7 only
add the following requirements line to your submit file:
requirements = (OpSysMajorVer == 7)
In the rare case that your job requires to run only on Scientific
Linux 6, you can use the same requirement with a 6 instead of a 7.
Does your job already have a requirements statement? If so, you can
add the requirements above to the pre-existing requirements by using the
&&. For example, if your jobs already require Gluster:
requirements = (Target.HasGluster == true)
You can add the requirements for using CentOS 7 like so:
requirements = (Target.HasGluster == true) && (OpSysMajorVer == 7)